Publication (1996-2018)
1. Heui-Soo Kim and Takenaka O.
1996. A comparison of TSPY genes from Y?chromosomal DNA of the great apes and
humans: Sequence, evolution, and phylogeny. Am.
J. Phys. Anthropol. 100(3): 301-309.
2. Heui-Soo Kim, Hirai H., and
Takenaka O. 1996. Molecular features of theTSPY gene of gibbons and Old World
monkeys. Chromosome Res. 4(7): 500-506.
3. Heui-Soo Kim, Kageyama T.,
Nakamura S., and Takenaka O. 1997. Nucleotide sequence of cDNA and the gene expression
of testis-specific protein Y in the Japanese monkey. Zoolog. Sci. 14(4): 609-614.
4. Mwenda
J.M., Takenaka O., Heui-Soo Kim,
Yamamoto T., Gurja B., Katsumata Y., Bambra C.S., Uchihi R., and Shotake T.
1997. Major histocompatibility complex DQA1 nucleotide sequences of gelada
baboon (Theropithecus gelada), olive baboon (Papio anubis), and yellow baboon
(Papio cynocephalus). Immunogenetics. 46(4): 365-366.
5. Mwenda
J.M., Takenaka O., Heui-Soo Kim,
Yamamoto T., Katsumata Y., Bambra C.S., Uchihi R., and Shotake T. 1997.
Nucleotide sequences of the major histocompatibility complex DQA1 locus of
Cercopithecus monkeys. Immunogenetics. 46(4): 363-364.
6. Heui-Soo Kim and Takenaka O.
1997. Evolution of DNA on Y-chromosome in hominoid primates as examined by PCR. Hum. Evol. 12(4): 233-239.
7. Heui-Soo Kim 1998. Human
ADP-ribosylation factor 4 (ARF4) gene Map position 3p14. 1. Chromosome Res. 6(8): 663.
8. Heui-Soo Kim and Crow T.J. 1998.
Human proto-oncogene Int-2/FGF-3. Map position 11q13.3-q13.4. Chromosome Res. 6(7): 579.
9. Heui-Soo Kim and Crow T.J. 1998.
Human endogenous retrovirus HC2. Map position 10q26. Chromosome Res. 6(7): 579.
10. Heui-Soo Kim and Crow T.J. 1998.
Assignment of the human endogenous retrovirus S71 (SSAV1) to chromosome 18 band
q12.3 by radiation hybrid mapping. Cytogenet.
Cell Genet. 83(3-4): 207.
11. Heui-Soo Kim 1998. Assignment of
the human ADP-ribosylation factor-like 3 (ARL3) gene to chromosome 10 band q23.
3 by radiation hybrid mapping. Cytogenet.
Genome Res. 83(3-4): 246.
12. Heui-Soo Kim 1998. Assignment of
the human ARNO3 gene (PSCD3) to chromosome 7p21 by radiation hybrid mapping. Ann. Hum. Genet. 62(06): 531-550.
13. Heui-Soo Kim 1998. Assignment of
the human basic fibroblast growth factor gene FGF2 to chromosome 4 band q26 by
radiation hybrid mapping. Cytogenet.
Genome Res. 83(1-2): 73.
14. Heui-Soo Kim 1998. Assignment of
the human cts18. 1 gene PSCD2L to chromosome 19 band q13 using a radiation
hybrid mapping panel. Cytogenet.
Genome Res. 83(1-2): 43.
15. Heui-Soo Kim and Crow T. 1998.
Human DXYS156 of pentanucleotide repeat (TAAAA) n: chromosomal localization by
somatic hybrid mapping and sequencing analysis. Cytogenet. Genome Res. 83(1-2): 54-55.
16. Heui-Soo Kim 1998. Human cts18.
1 gene: chromosomal localization and PH-domain analysis. Genes Genet. Syst. 73(5): 293-296.
17. Heui-Soo Kim, Chen Y., and Lonai
P. 1998. Complex regulation of multiple cytohesin-like genes in murine tissues
and cells. FEBS Lett. 433(3): 312-316.
18. Heui-Soo Kim 1999. Assignment of
the human OB binding protein-2 gene (CD33L2) to chromosome 19q13. 3 by
radiation hybrid mapping. Cytogenet.
Genome Res. 84(1-2): 96.
19. Heui-Soo Kim 1999. Assignment of
the human B3-1 gene (PSCDBP) to chromosome 2 band q11. 2 by radiation hybrid
mapping. Cytogenet. Genome Res. 84(1-2): 95.
20. Heui-Soo Kim 1999. Assignment of
the human ADP-ribosylation factor 6 (ARF6) gene to chromosome 7q22. 1 by
radiation hybrid mapping. Cytogenet.
Genome Res. 84(1-2): 94.
21. Heui-Soo Kim 1999. Assignment of
human interleukin 16 (IL16) to chromosome 15q26. 3 by radiation hybrid mapping. Cytogenet. Genome Res. 84(1-2): 93.
22. Heui-Soo Kim 1999. Ribosomal
protein S4 gene of the African green monkey (Cercopithecus aethiops). Folia Primatol. (Basel). 70(3): 177-179.
23. Heui-Soo Kim, Takenaka O., and
Crow T.J. 1999. Identification of human endogenous retrovirus HC2-like elements
in primates. Folia Primatol. (Basel). 70(5): 295-297.
24. Heui-Soo Kim, Winstanley C.,
Wadekar R.V., Takenaka O., Mitsunaga F., Kageyama T., Hyun B.-H., and Crow T.J.
1999. Two tetranucleotide repeats within the Xq21. 3/Yp11. 2 human specific
region of homology and their conservation in primate evolution. Zoolog. Sci. 16(2): 357-362.
25. Heui-Soo Kim, Wadekar R.V.,
Takenaka O., Winstanley C., Mitsunaga F., Kageyama T., Hyun B.H., and Crow T.J.
1999. SINE-R.C2 (a Homo sapiens specific retroposon) is homologous to CDNA from
postmortem brain in schizophrenia and to two loci in the Xq21.3/Yp block linked
to handedness and psychosis. Am.
J. Med. Genet. 88(5): 560-566.
26. Heui-Soo Kim and Crow T.J. 1999.
Isolation of novel human endogenous retrovirus HC2-like elements in human
chromosomes. AIDS Res. Hum. Retroviruses. 15(3): 299-302.
27. Heui-Soo Kim, Takenaka O., and
Crow T.J. 1999. Cloning and nucleotide sequence of retroposons specific to
hominoid primates derived from an endogenous retrovirus (HERV-K). AIDS Res. Hum. Retroviruses. 15(6): 595-601.
28. Heui-Soo Kim, Wadekar R.V.,
Takenaka O., Hyun B.-H., and Crow T.J. 1999. Phylogenetic analysis of a
retroposon family in African great apes. J.
Mol. Evol. 49(5): 699-702.
29. Heui-Soo Kim, Wadekar R.V., Takenaka
O., Hyun B.H., and Crow T.J. 1999. Phylogenetic analysis of HERV-K LTR-like
elements in primates: presence in some new world monkeys and evidence of recent
parallel evolution in these species and in homo sapiens. Arch. Virol. 144(10): 2035-2040.
30. Heui-Soo Kim, Takenaka O., and
Crow T.J. 1999. Isolation and phylogeny of endogenous retrovirus sequences
belonging to the HERV-W family in primates. J.
Gen. Virol. 80 ( Pt 10): 2613-2619.
31. Heui-Soo Kim and Crow T.J. 1999.
Identification and phylogenetic analysis of novel human endogenous retroviral
sequences belonging to the HERV-H family on human X and Y chromosomes. Genes Genet. Syst. 74(4): 129-134.
32. Heui-Soo Kim and Crow T.J. 1999.
Identification and phylogeny of novel human endogenous retroviral sequences belonging
to the HERV-W family on the human X chromosome. Arch. Virol. 144(12): 2403-2413.
33. Heui-Soo Kim and Crow T.J. 1999.
Presence and phylogenetic analysis of HERV-K LTR on human X and Y chromosomes:
evidence for recent proliferation. Genes
Genet. Syst. 74(5): 267-270.
34. Heui-Soo Kim and Crow T.J. 1999.
Presence and phylogenetic relationships of a hominoid-specific retroposon
family on the human Y chromosome. Zoolog.
Sci. 16(6): 963-970.
35. Heui-Soo Kim and Crow T.J. 2000.
Phylogenetic relationships of a class of hominoid-specific retro-elements
(SINE-R) on human chromosomes 7 and 17. Ann.
Hum. Biol. 27(1): 83-93.
36. Heui-Soo Kim, Choi J.-Y., Jung
A.-R., Jang K.-L., Lee W.-H., Choi W.-C., Crow T., and Hyun B.-H. 2000.
Assignment of the human RhoHP1 gene (ARHD) to chromosome 11q14. 3 by radiation
hybrid mapping. Cytogenet. Genome Res. 89(1-2): 53.
37. Heui-Soo Kim, Crow T.J., and
Hyun B.H. 2000. Assignment of the endogenous retrovirus HERV-R (ERV3) to human
chromosome 7q11.2 by radiation hybrid mapping. Cytogenet. Cell Genet. 89(1-2): 10.
38. Heui-Soo Kim, Hyun B.H., and
Crow T.J. 2000. Phylogenetic analysis of retroposon family as exemplified on
human chromosome 13: further evidence for recent proliferation. Mol. Cells. 10(3): 356-360.
39. Heui-Soo Kim and Takenaka O.
2000. Evolution of the X-linked zinc finger gene and the Y-linked zinc finger
gene in primates. Mol.
Cells. 10(5): 512-518.
40. Heui-Soo Kim, Hyun B.H., Choi
J.Y., and Crow T.J. 2000. Phylogenetic analysis of a retroposon family as
represented on the human X chromosome. Genes
Genet. Syst. 75(4): 197-202.
41. Heui-Soo Kim, Choi J.Y., Lee
W.H., Jang K.L., and Hyun B.H. 2000. Nucleotide sequence and phylogenetic
analysis of long terminal repeats of human endogenous retrovirus K family
(HERV-K) on human chromosomes. Microb.
Comp. Genomics. 5(3): 121-127.
42. Hashimoto
C., Hayakawa S., Heui-Soo Kim,
and Takenaka O. 2000. Sex identification using PCR with non-invasive samples in
chimpanzee, bonobos and Japanese macaques. Primate
Res. 16(2): 133-138.
43. Lee
J.M., Choi J.Y., Kim J.S., Hyun B.H., and Heui-Soo
Kim 2000. Identification and phylogeny of new human endogenous
retroviral sequences belonging to the HERV-H family. AIDS Res. Hum. Retroviruses. 16(18): 2055-2058.
44. Choi
J.Y., Kim J.S., Lee J.M., Hyun B.H., and Heui-Soo
Kim 2001. Isolation and phylogeny of new endogenous retroviral
sequences belonging to the HERV-F family. AIDS
Res. Hum. Retroviruses. 17(4): 367-370.
45. Heui-Soo Kim and Lee W.H. 2001.
Human endogenous retrovirus HERV-W family: chromosomal localization,
identification, and phylogeny. AIDS
Res. Hum. Retroviruses. 17(7): 643-648.
46. Heui-Soo Kim, Yi J.M., and Jeon
S.H. 2001. Isolation and phylogenetic analysis of HERV-K long terminal repeat
cDNA in cancer cells. AIDS
Res. Hum. Retroviruses. 17(10): 987-990.
47. Heui-Soo Kim 2001. The human FGF
gene family: chromosome location and phylogenetic analysis. Cytogenet. Genome Res. 93(1-2): 131-132.
48. Yi
J.M., Kim H.M., and Heui-Soo Kim 2001. Molecular cloning and phylogenetic analysis of the human endogenous
retrovirus HERV-K long terminal repeat elements in various cancer cells. Mol. Cells. 12(1): 137-141.
49. Heui-Soo Kim and Takenaka O.
2001. Phylogeny of SINE-R retroposons in Asian apes. Mol. Cells. 12(2): 262-266.
50. Heui-Soo Kim 2001. Sequence and
phylogeny of HERV-W pol fragments. AIDS
Res. Hum. Retroviruses. 17(17): 1665-1671.
51. Yi
J.M., Lee W.H., Kim H.M., and Heui-Soo
Kim 2001. Identification of new endogenous retroviral sequences
belonging to the HERV-W family in human cancer cells. Intervirology. 44(6): 333-338.
52. Yi
J.M., Kim H.M., Lee W.H., and Heui-Soo
Kim 2002. Molecular cloning and phylogenetic analysis of new human
endogenous retrovirus HERV-W family in cancer cells. Curr. Microbiol. 44(3): 216-220.
53. Heui-Soo Kim, Hyun B.H., and
Takenaka O. 2002. Isolation and phylogeny of endogenous retrovirus HERV-F
family in Old World monkeys. Brief report. Arch.
Virol. 147(2): 393-400.
54. Koshio
C., Tomishima M., Shimizu K., Heui-Soo
Kim, and Takenaka O. 2002. Microsatellites in the gypsy moth, Lymantria
dispar L.(Lepidoptera: Lymantriidae). Appl.
Entomol. Zoolog. 37(2): 309-312.
55. Heui-Soo Kim and Crow T.J. 2002.
Identification and Phylogeny of the Human Endogenous Retrovirus HERV-W LTR
Family in Human Brain cDNA Library and Xq21.3 Region. J. Microbiol. Biotechnol. 12(3): 508-513.
56. Huh
J.W., Hong K.W., Yi J.M., Kim T.H., Takenaka O., Lee W.H., and Heui-Soo Kim 2003. Molecular
phylogeny and evolution of the human endogenous retrovirus HERV-W LTR family in
hominoid primates. Mol.
Cells. 15(1): 122-126.
57. Yi
J.M., Takenaka O., and Heui-Soo Kim 2003. Molecular characterization and phylogenetic relationship of HERV-W family
in the Macaca fuscata. Arch.
Virol. 148(8): 1613-1622.
58. Yi
J.M., Kim T.H., Huh J.I., Nakamura S., Takenaka O., Lee W.H., Hyun B.H., and Heui-Soo Kim 2003. Endogenous
retrovirus HC2 pol fragments in the squirrel monkey: expression, evolution, and
phylogeny. Arch. Virol. 148(11): 2257-2265.
59. Yi
J.M. and Heui-Soo Kim 2004.
Expression analysis of endogenous retroviral elements belonging to the HERV-F
family from human tissues and cancer cells. Cancer
Lett. 211(1): 89-96.
60. Yi
J.M. and Heui-Soo Kim 2004.
Evolutionary implication of human endogenous retrovirus HERV-H family. J. Hum. Genet. 49(4): 215-219.
61. Yi
J.M., Kim H.M., and Heui-Soo Kim 2004. Expression of the human endogenous retrovirus HERV-W family in various
human tissues and cancer cells. J.
Gen. Virol. 85(Pt 5): 1203-1210.
62. Yi
J.M., Takenaka O., and Heui-Soo Kim 2004. Expression and identification of HERV-W family in Japanese monkeys
(Macaca fuscata). Zoolog.
Sci. 21(6): 649-659.
63. Rovio
A.T., Abel J., Ahola A.L., Andres A.M., Bertranpetit J., Blancher A., Bontrop
R.E., Chemnick L.G., Cooke H.J., Cummins J.M., Davis H., Elliott D., Fritsche
E., Hargreave T., Hoffman S., Jequier A., Kao S.-H., Heui-Soo Kim, Marchington D., Mehmet D., Otting N., Poulton
J., Ryder O., Schuppe H.-C., Takenaka O., Wei Y.-H., Wichmann L., and Jacobs H.
2004. A prevalent POLG CAG microsatellite length allele in humans and African
great apes. Mamm. Genome. 15(6): 492-502.
64. Kim
T.H., Jeon Y.J., Yi J.M., Kim D.S., Huh J.W., Hur C.G., and Heui-Soo Kim 2004. The
distribution and expression of HERV families in the human genome. Mol. Cells. 18(1): 87-93.
65. Yi
J.M., Kim T.H., Huh J.W., Park K.S., Jang S.B., Kim H.M., and Heui-Soo Kim 2004. Human
endogenous retroviral elements belonging to the HERV-S family from human
tissues, cancer cells, and primates: expression, structure, phylogeny and
evolution. Gene. 342(2): 283-292.
66. Hirai
H., Matsubayashi K., Kumazaki K., Kato A., Maeda N., and Heui-Soo Kim 2005. Chimpanzee chromosomes: retrotransposable
compound repeat DNA organization (RCRO) and its influence on meiotic prophase
and crossing-over. Cytogenet.
Genome Res. 108(1-3): 248-254.
67. Yi
J.M., Takenaka O., and Heui-Soo Kim 2005. Molecular cloning and phylogeny of HERV-E family that is expressed in
Japanese monkey (Macaca fuscata) tissues. Arch.
Virol. 150(5): 869-882.
68. Kim
T.H., Jeon Y.J., Kim W.Y., and Heui-Soo
Kim 2005. HESAS: HERVs Expression and Structure Analysis System. Bioinformatics. 21(8): 1699-1700.
69. Park
E.S., Huh J.W., Kim T.H., Kwak K.D., Kim W., and Heui-Soo Kim 2005. Analysis of newly identified low copy
AluYj subfamily. Genes Genet. Syst. 80(6): 415-422.
70. Yi
J.M., Kim H.M., and Heui-Soo Kim 2006. Human endogenous retrovirus HERV-H family in human tissues and cancer
cells: expression, identification, and phylogeny. Cancer Lett. 231(2): 228-239.
71. Yi
J.M. and Heui-Soo Kim 2006.
Molecular evolution of the HERV-E family in primates. Arch. Virol. 151(6): 1107-1116.
72. Heui-Soo Kim, Yi J.M., Hirai H.,
Huh J.W., Jeong M.S., Jang S.B., Kim C.G., Saitou N., Hyun B.H., and Lee W.H.
2006. Human Endogenous Retrovirus (HERV)-R family in primates: Chromosomal
location, gene expression, and evolution. Gene. 370: 34-42.
73. Huh
J.W., Kim T.H., Yi J.M., Park E.S., Kim W.Y., Sin H.S., Kim D.S., Min D.S., Kim
S.S., Kim C.B., Hyun B.H., Kang S.K., Jung J.S., Lee W.H., Takenaka O., and Heui-Soo Kim 2006. Molecular
evolution of the periphilin gene in relation to human endogenous retrovirus m
element. J. Mol. Evol. 62(6): 730-737.
74. Lee
J.W. and Heui-Soo Kim 2006.
Endogenous retrovirus HERV-I LTR family in primates: sequences, phylogeny, and
evolution. Arch. Virol. 151(8): 1651-1658.
75. Sin
H.S., Huh J.W., Kim D.S., Kang D.W., Min D.S., Kim T.H., Ha H.S., Kim H.H., Lee
S.Y., and Heui-Soo Kim 2006.
Transcriptional control of the HERV-H LTR element of the GSDML gene in human
tissues and cancer cells. Arch.
Virol. 151(10): 1985-1994.
76. Kim
D.S., Kim T.H., Huh J.W., Kim I.C., Kim S.W., Park H.S., and Heui-Soo Kim 2006. LINE FUSION
GENES: a database of LINE expression in human genes. BMC Genomics. 7: 139.
77. Sin
H.S., Huh J.W., Kim D.S., Kim T.H., Ha H.S., Kim W.Y., Park H.K., Kim C.M., and Heui-Soo Kim 2006. Endogenous
retrovirus-related sequences provide an alternative transcript of MCJ genes in
human tissues and cancer cells. Genes
Genet. Syst. 81(5): 333-339.
78. Heui-Soo Kim 2006. Role of HERVs
in primate genome evolution. Cellscience. 3(2): 7-14.
79. Jin
J.-K., Kim N.-H., Lee Y.-J., Kim Y.-S., Choi E.-K., Kozlowski P.B., Park M.H.,
and Heui-Soo Kim 2006.
Phospholipase D1 is up-regulated in the mitochondrial fraction from the brains
of Alzheimer's disease patients. Neurosci.
Lett. 407(3): 263-267.
80. Huh
J.W., Kim D.S., Ha H.S., Kim T.H., Kim W., and Heui-Soo Kim 2006. Formation of a new solo-LTR of the human
endogenous retrovirus H family in human chromosome 21. Mol. Cells. 22(3): 360-363.
81. Yi
J.M., Schuebel K., and Heui-Soo Kim 2007. Molecular genetic analyses of human endogenous retroviral elements
belonging to the HERV-P family in primates, human tissues, and cancer cells. Genomics. 89(1): 1-9.
82. Yi
J.M. and Heui-Soo Kim 2007.
Molecular phylogenetic analysis of the human endogenous retrovirus E (HERV-E)
family in human tissues and human cancers. Genes
Genet. Syst. 82(1): 89-98.
83. Yi
J.M. and Heui-Soo Kim 2007.
Expression and phylogenetic analyses of human endogenous retrovirus HC2
belonging to the HERV-T family in human tissues and cancer cells. J. Hum. Genet. 52(4): 285-296.
84. Kim
D.S., Huh J.W., and Heui-Soo Kim 2007. Transposable elements in human cancers by genome-wide EST alignment. Genes Genet. Syst. 82(2): 145-156.
85. Kim
D.-S., Huh J.-W., and Heui-Soo Kim 2007. HYBRIDdb: a database of hybrid genes in the human genome. BMC Genomics. 8(1): 128.
86. Ha
H.S., Huh J.W., Kim D.S., Kang D.W., Cho B.W., and Heui-Soo Kim 2007. Promoter activity of the long terminal
repeats of porcine endogenous retroviruses of the Korean domestic pig. Mol. Cells. 24(1): 148-151.
87. Huh
J.W., Cho B.W., Kim D.S., Ha H.S., Noh Y.N., Yi J.M., Lee W.H., and Heui-Soo Kim 2007. Long terminal
repeats of porcine endogenous retroviruses in Sus scrofa. Arch. Virol. 152(12): 2271-2276.
88. Heui-Soo Kim, Kim D.S., Huh
J.W., Ahn K., Yi J.M., Lee J.R., and Hirai H. 2008. Molecular characterization
of the HERV-W env gene in humans and primates: expression, FISH, phylogeny, and
evolution. Mol. Cells. 26(1): 53-60.
89. Huh
J.W., Kim D.S., Kang D.W., Ha H.S., Ahn K., Noh Y.N., Min D.S., Chang K.T., and Heui-Soo Kim 2008.
Transcriptional regulation of GSDML gene by antisense-oriented HERV-H LTR
element. Arch. Virol. 153(6): 1201-1205.
90. Huh
J.W., Ha H.S., Kim D.S., and Heui-Soo
Kim 2008. Placenta-restricted expression of LTR-derived NOS3. Placenta. 29(7): 602-608.
91. Heui-Soo Kim, Ahn K., and Kim
D.S. 2008. Quantitative expression of the HERV-W env gene in human tissues. Arch. Virol. 153(8): 1587-1591.
92. Huh
J.W., Kim D.S., Ha H.S., Lee J.R., Kim Y.J., Ahn K., Lee S.R., Chang K.T., and Heui-Soo Kim 2008. Cooperative
exonization of MaLR and AluJo elements contributed an alternative promoter and
novel splice variants of RNF19. Gene. 424(1-2): 63-70.
93. Kim
Y.J., Huh J.W., Kim D.S., Bae M.I., Lee J.R., Ha H.S., Ahn K., Kim T.O., Song
G.A., and Heui-Soo Kim 2009.
Molecular characterization of the DYX1C1 gene and its application as a cancer
biomarker. J. Cancer Res. Clin. Oncol. 135(2): 265-270.
94. Lee
J., Han K., Meyer T.J., Heui-Soo Kim,
and Batzer M.A. 2008. Chromosomal inversions between human and chimpanzee
lineages caused by retrotransposons. PLoS
One. 3(12): e4047.
95. Huh
J.W., Kim D.S., Ha H.S., Ahn K., Chang K.T., Cho B.W., and Heui-Soo Kim 2009. Identification and molecular
characterization of PERV gamma1 long terminal repeats. Mol. Cells. 27(1): 119-123.
96. Lee
J.R., Huh J.W., Kim D.S., Ha H.S., Ahn K., Kim Y.J., Chang K.T., and Heui-Soo Kim 2009. Lineage
specific evolutionary events on SFTPB gene: Alu recombination-mediated deletion
(ARMD), exonization, and alternative splicing events. Gene. 435(1-2): 29-35.
97. Ahn
K. and Heui-Soo Kim 2009.
Structural and quantitative expression analyses of HERV gene family in human
tissues. Mol. Cells. 28(2): 99-103.
98. Huh
J.W., Kim Y.H., Lee S.R., Kim H., Kim D.S., Heui-Soo Kim, Kang H.S., and Chang K.T. 2009. Gain of new
exons and promoters by lineage-specific transposable elements-integration and
conservation event on CHRM3 gene. Mol.
Cells. 28(2): 111-117.
99. Kim
D.-S., Cho C.-Y., Huh J.-W., Heui-Soo
Kim, and Cho H.-G. 2009. EVOG: a database for evolutionary analysis of
overlapping genes. Nucleic
Acids Res. 37(suppl 1): D698-D702.
100. Huh
J.-W., Kim D.-S., Ha H.-S., Ahn K., Chang K.-T., Cho B.-W., and Heui-Soo Kim 2009.
Identification and molecular characterization of PERV gamma1 long terminal
repeats. Mol. Cells. 27(1): 119-123.
101. Kang
K.H., Higashino A., Heui-Soo Kim,
Lee Y.T., and Kageyama T. 2009. Molecular cloning, gene expression, and tissue
distribution of adiponectin and its receptors in the Japanese monkey, Macaca
fuscata. J. Med. Primatol. 38(2): 77-85.
102. Huh
J.-W., Kim D.-S., Noh Y.-N., Park S.-J., Ha H.-S., Kim C.-G., Lee Y.-H., Kang
C.-K., Chang K.-T., and Heui-Soo Kim 2009. Dynamic evolution of tRNAThr-derivedHpaI SINEs and effect on genomes
ofOncorhynchus species. Genes
Genom. 31(3): 217-226.
103. Li
J., Han K., Xing J., Heui-Soo Kim,
Rogers J., Ryder O.A., Disotell T., Yue B., and Batzer M.A. 2009. Phylogeny of
the macaques (Cercopithecidae: Macaca) based on Alu elements. Gene. 448(2): 242-249.
104. Huh
J.-W., Kim Y.-H., Lee S.-R., Kim D.-S., Park S.-J., Kim H., Kim J.-S., Song
B.-S., Heui-Soo Kim, and
Chang K.-T. 2010. Four different ways of alternative transcripts generation
mechanism in ADRA1A gene. Genes
Genet. Syst. 85(1): 65-73.
105. Ahn
K., Huh J.W., Kim D.S., Ha H.S., Kim Y.J., Lee J.R., and Heui-Soo Kim 2010. Quantitative analysis of alternative
transcripts of human PCDH11X/Y genes. Am.
J. Med. Genet. B Neuropsychiatr. Genet. 153B(3): 736-744.
106. Huh
J.-W., Kim Y.-H., Kim D.-S., Park S.-J., Lee S.-R., Kim S.-H., Kim E., Kim
S.-U., Kim M.-S., and Heui-Soo Kim 2010. Alu-derived old world monkeys exonization event and experimental
validation of the LEPR gene. Mol.
Cells. 30(3): 201-207.
107. Park
S.-J., Huh J.-W., Kim D.-S., Ha H.-S., Jung Y.-D., Ahn K., Oh K.B., Park E.-W.,
Chang K.-T., and Heui-Soo Kim 2010. Analysis of the molecular and regulatory properties of active porcine
endogenous retrovirus gamma-1 long terminal repeats in kidney tissues of the
NIH-Miniature pig. Mol.
Cells. 30(4): 319-325.
108. Kim
D.-S., Huh J.-W., Kim Y.-H., Park S.-J., Heui-Soo
Kim, and Chang K.-T. 2010. Bioinformatic analysis of TE-spliced new
exons within human, mouse and zebrafish genomes. Genomics. 96(5): 266-271.
109. Hong
K.-W., Shin Y.-B., Jin H.-S., Lim J.-E., Choi J.-Y., Chang K.-T., Heui-Soo Kim, and Oh B. 2011.
Alternative splicing of human height-related zinc finger and BTB
domain-containing 38 gene through Alu exonization. Biochem. Genet. 49(5-6): 283-291.
110. Park
S.-J., Huh J.-W., Kim Y.-H., Kim J.-S., Song B.-S., Lee S.-R., Kim S.-U., Heui-Soo Kim, Imakawa K., and
Chang K.-T. 2011. Quantitative analysis of retromer complex-related genes
during embryo development in the mouse. Mol.
Cells. 31(5): 431-436.
111. Ahn
K., Bae J.-H., Nam K.-H., Lee C.-E., Park K.-D., Lee H.-K., Cho B.-W., and Heui-Soo Kim 2011.
Identification of reference genes for normalization of gene expression in
thoroughbred and Jeju native horse (Jeju pony) tissues. Genes Genom. 33(3): 245-250.
112. Ha
H.-S., Huh J.-W., Gim J.-A., Han K., and Heui-Soo
Kim 2011. Transcriptional variations mediated by an alternative
promoter of the FPR3 gene. Mamm.
Genome. 22(9-10): 621-633.
113. Nam
G.-H., Ahn K., Bae J.-H., Han K., Lee C.-E., Park K.-D., Lee S.-H., Cho B.-W.,
and Heui-Soo Kim 2011.
Genomic Structure and Expression Analyses of the PYGM Gene in the Thoroughbred
Horse. Zoolog. Sci. 28(4): 276-280.
114. Ahn
K., Han K., and Heui-Soo Kim 2011. Quantitative analysis of the HERV pol gene in human tissues. Genes Genom. 33(4): 439-443.
115. Bae
J.-H., Ahn K., Nam G.-H., Lee C.-E., Park K.-D., Lee H.-K., Cho B.-W., and Heui-Soo Kim 2011. Molecular
Characterization of Alternative Transcripts of the Horse BMAL1 Gene. Zoolog. Sci. 28(9): 671-675.
116. Kim
Y.-J., Huh J.-W., Kim D.-S., Han K., Kim H.-M., and Heui-Soo Kim 2011. Evolutionary diversification of DYX1C1
transcripts via an HERV-H LTR integration event. Genes Genet. Syst. 86(4): 277-284.
117. Ha
H.-S., Chung W.-K., Ahn K., Bae J.-H., Park S.-J., Moon J.-W., Nam K.-H., Han
K., Cho H.-G., and Heui-Soo Kim 2011. Development of GEBRET: a web-based analysis tool for retroelements in
primate genomes. Genes Genom. 33(6): 679-684.
118. Jung
Y.-D., Huh J.-W., Kim D.-S., Kim Y.-J., Ahn K., Ha H.-S., Lee J.-R., Yi J.M.,
Moon J.-W., Kim T.-O., Song G.-A., Han K., and Heui-Soo Kim 2011. Quantitative analysis of transcript
variants of CHM gene containing LTR12C element in humans. Gene. 489(1): 1-5.
119. Kim
D.-W., Jeong S., Kim D.S., Heui-Soo
Kim, Seo S.-B., and Hahn Y. 2012. Inactivation of the MSLNL gene
encoding mesothelin-like protein during African great ape evolution. Gene. 496(1): 17-21.
120. Nam
G.-H., Ahn K., Bae J.-H., Cho B.-W., Park K.-D., Lee H.-K., Yang Y.-M., Kim
T.-H., Seong H.-H., Han K., and Heui-Soo
Kim 2012. Identification of ORF sequences and exercise-induced
expression change in thoroughbred horse OXCT1 gene. Gene. 496(1): 45-48.
121. Ha
H.-S., Lee Y.-C., Park S.-J., Jung Y.-D., Ahn K., Moon J.-W., Han K., Oh K.-B.,
Kim T.-H., Seong H.-H., and Heui-Soo
Kim 2012. In vitro CpG methylation and garcinol reduce PERV LTR
promoter activity. Genes
Genom. 34(2): 217-222.
122. Ha
H.-S., Moon J.-W., Gim J.-A., Jung Y.-D., Ahn K., Oh K.-B., Kim T.-H., Seong
H.-H., and Heui-Soo Kim 2012.
Identification and characterization of transposable element-mediated chimeric
transcripts from porcine Refseq and EST databases. Genes Genom. 34(4): 409-414.
123. Moon
J.-W., Ahn K., Bae J.-H., Nam G.-H., Cho B.-W., Park K.-D., Lee H.-K., Yang
Y.-M., Kim T.-H., Seong H.-H., Han K., and Heui-Soo
Kim 2012. mRNA sequence analysis and quantitative expression of the
ADAMTS4 gene in the thoroughbred horse. Genes
Genom. 34(4): 441-445.
124. Heui-Soo Kim 2012. Genomic
impact, chromosomal distribution and transcriptional regulation of HERV
elements. Mol. Cells. 33(6): 539-544.
125. Lee
J.-R. and Heui-Soo Kim 2012.
Radiation-induced retroelement-mediated genomic instability. Biotechnol. Bioprocess Eng. 17(3): 439-445.
126. Lee
J.-R., Ahn K., Kim Y.-J., Jung Y.-D., and Heui-Soo
Kim 2012. Radiation-induced human endogenous retrovirus (HERV)-R env
gene expression by epigenetic control. Radiat.
Res. 178(5): 379-384.
127. Park
K.-D., Park J., Ko J., Kim B.C., Heui-Soo
Kim, Ahn K., Do K.-T., Choi H., Kim H.-M., and Song S. 2012. Whole
transcriptome analyses of six thoroughbred horses before and after exercise
using RNA-Seq. BMC Genomics. 13(1): 473.
128. Park
S.-J., Huh J.-W., Kim Y.-H., Heui-Soo
Kim, and Chang K.-T. 2012. Intron Retention and TE Exonization Events
in ZRANB2. Compar. Funct. Genom. 2012.
129. Joung
Y.H., Lim E.J., Darvin P., Chung S.C., Jang J.W., Do Park K., Lee H.K., Heui-Soo Kim, Park T., and Yang
Y.M. 2012. MSM enhances GH signaling via the Jak2/STAT5b pathway in
osteoblast-like cells and osteoblast differentiation through the activation of
STAT5b in MSCs.
130. Park
S.-J., Huh J.-W., Kim Y.-H., Lee S.-R., Kim S.-H., Kim S.-U., Heui-Soo Kim, Kim M.K., and
Chang K.-T. 2013. Selection of internal reference genes for normalization of
quantitative reverse transcription polymerase chain reaction (qRT-PCR) analysis
in the canine brain and other organs. Mol.
Biotechnol. 54(1): 47-57.
131. Ahn
K., Gim J.-A., Ha H.-S., Han K., and Heui-Soo
Kim 2013. The novel MER transposon-derived miRNAs in human genome. Gene. 512(2): 422-428.
132. Jung
Y.-D., Ha H.-S., Park S.-J., Oh K.-B., Im G.-S., Kim T.-H., Seong H.-H., and Heui-Soo Kim 2013.
Identification and promoter analysis of PERV LTR subtypes in NIH-miniature pig. Mol. Cells. 35(2): 99-105.
133. Ahn
K., Bae J.-H., Gim J.-A., Lee J.-R., Jung Y.-D., Park K.-D., Han K., Cho B.-W.,
and Heui-Soo Kim 2013.
Identification and characterization of transposable elements inserted into the
coding sequences of horse genes. Genes
Genom. 35(4): 483-489.
134. Jung
Y.-D., Ahn K., Kim Y.-J., Bae J.-H., Lee J.-R., and Heui-Soo Kim 2013. Retroelements: molecular features and
implications for disease. Genes
Genet. Syst. 88(1): 31-43.
135. Kim
Y.-J., Jung Y.-D., Kim T.-O., and Heui-Soo
Kim 2013. Alu-related transcript of TJP2 gene as a marker for
colorectal cancer. Gene. 524(2): 268-274.
136. Jung
Y.-D., Lee J.-R., Kim Y.-J., Ha H.-S., Oh K.-B., Im G.-S., Choi B.-H., and Heui-Soo Kim 2013. Promoter
activity analysis and methylation characterization of LTR elements of PERVs in
NIH miniature pig. Genes
Genet. Syst. 88(2): 135-142.
137. Shin
W., Lee J., Son S.-Y., Ahn K., Heui-Soo
Kim, and Han K. 2013. Human-specific HERV-K insertion causes genomic
variations in the human genome. PLoS
One. 8(4): e60605.
138. Park
S.-J., Kim Y.-H., Lee Y., Kim K.-M., Heui-Soo
Kim, Lee S.-R., Kim S.-U., Kim S.-H., Kim J.-S., and Jeong K.-J. 2013.
Selection of appropriate reference genes for RT-qPCR analysis in a
streptozotocin-induced Alzheimer’s disease model of cynomolgus monkeys (Macaca
fascicularis). PLoS One. 8(2): e56034.
139. Han
K., Lee J., Heui-Soo Kim,
Yang K., and Yi J.M. 2013. DNA methylation of mobile genetic elements in human
cancers. Genes Genom. 35(3): 265-271.
140. Bae
M.-I., Kim Y.-J., Lee J.-R., Jung Y.-D., and Heui-Soo Kim 2013. A New Exon Derived from a Mammalian
Apparent LTR Retrotransposon of the SUPT16H Gene. Int. J. Genomics. 2013: 387594.
141. Joung
Y.H., Lim E.J., Darvin P., Jang J.W., Park K.D., Lee H.K., Heui-Soo Kim, Cho B.W., Park T., and Chung S. 2013.
Hwanggeumchal sorghum extract enhances BMP7 and GH signaling through the
activation of Jak2/STAT5B in MC3T3?E1 osteoblastic cells. Mol.
Med. Report. 8(3): 891-896.
142. Kim
H., Lee T., Park W., Lee J.W., Kim J., Lee B.-Y., Ahn H., Moon S., Cho S., Do
K.-T., Heui-Soo Kim, Lee
H.-K., Lee C.-K., Kong H.-S., Yang Y.-M., Park J., Kim H.-M., Kim B.C., Hwang
S., and Bhak J. 2013. Peeling back the evolutionary layers of molecular
mechanisms responsive to exercise-stress in the skeletal muscle of the racing
horse. DNA Res. 20(3): 287-298.
143. Park
S.-J., Kim Y.-H., Huh J.-W., Lee S.-R., Kim S.-H., Kim S.-U., Kim J.-S., Jeong
K.-J., Kim K.-M., and Heui-Soo Kim 2013. Selection of new appropriate reference genes for RT-qPCR analysis via
transcriptome sequencing of cynomolgus monkeys (Macaca fascicularis). PLoS One. 8(4): e60758.
144. Kim
K.-H., Park J.K., Choi Y.-W., Kim Y.-H., Lee E.N., Lee J.-R., Heui-Soo Kim, Baek S.-Y., Kim
B.-S., and Lee K.-S. 2013. Hexane extract of aged black garlic reduces cell
proliferation and attenuates the expression of ICAM-1 and VCAM?1 in TNF-α-activated human endometrial stromal cells. Int. J. Mol. Med. 32(1): 67-78.
145. Eo
J., Choi B.-H., Jung Y.-D., Kwon Y.-J., Kim T.-H., Seong H.-H., and Heui-Soo Kim 2013. Polymorphism
analysis of tyrosine hydroxylase (TH) in military working dogs. Genes Genom. 35(6): 817-821.
146. Eo
J. and Heui-Soo Kim 2013.
Repeat polymorphism analysis for examining genetic variability and the
implications for specific traits in dog breeds. Genes Genet. Syst. 88(5): 273-278.
147. Jo
H., Gim J.A., Jeong K.S., Heui-Soo
Kim, and Joo G.J. 2014. Application of DNA barcoding for identification
of freshwater carnivorous fish diets: Is number of prey items dependent on size
class for Micropterus salmoides? Ecol. Evol. 4(2): 219-229.
148. Yim
H.-S., Cho Y.S., Guang X., Kang S.G., Jeong J.-Y., Cha S.-S., Oh H.-M., Lee
J.-H., Yang E.C., Kwon K.K., Kim Y.J., Kim T.W., Kim W., Jeon J.H., Kim S.-J.,
Choi D.H., Jho S., Kim H.-M., Ko J., Kim H., Shin Y.-A., Jung H.-J., Zheng Y.,
Wang Z., Chen Y., Chen M., Jiang A., Li E., Zhang S., Hou H., Kim T.H., Yu L.,
Liu S., Ahn K., Cooper J., Park S.-G., Hong C.P., Jin W., Heui-Soo Kim, Park C., Lee K., Chun S., Morin P.A., O'Brien
S.J., Lee H., Kimura J., Moon D.Y., Manica A., Edwards J., Kim B.C., Kim S.,
Wang J., Bhak J., Lee H.S., and Lee J.-H. 2014. Minke whale genome and aquatic
adaptation in cetaceans. Nat.
Genet. 46(1): 88-92.
149. Kang
Y.-J., Jo J.-O., Ock M.S., Chang H.-K., Baek K.-W., Lee J.-R., Choi Y.H., Kim
W.-J., Leem S.-H., and Heui-Soo Kim 2014. Human ERV3-1 env protein expression in various human tissues and tumours. J. Clin. Pathol. 67(1): 86-90.
150. Eo
J., Gim J.-A., Choi B.-H., Park K.-D., Yang Y.-M., Lee H.-K., Do K.-T., Cho
B.-W., and Heui-Soo Kim 2014.
Genetic profiling of thoroughbred racehorses by microsatellite marker analysis. Genes Genom. 36(1): 119-123.
151. Joung
Y.H., Na Y.M., Yoo Y.B., Darvin P., Sp N., Kang D.Y., Kim S.Y., Heui-Soo Kim, Choi Y.H., and Lee
H.K. 2014. Combination of AG490, a Jak2 inhibitor, and methylsulfonylmethane
synergistically suppresses bladder tumor growth via the Jak2/STAT3 pathway. Int. J. Oncol. 44(3): 883-895.
152. Kwon
Y.-J., Choi B.-H., Eo J., Kim C., Jung Y.-D., Lee J.-R., Choi Y., Gim J.-A.,
Lee D.-H., Ha J.-H., Kim D.-S., Huh J.-W., Kim T.-H., Seong H.-H., and Heui-Soo Kim 2014. Genetic
structure and variability of the working dog inferred from microsatellite
marker analysis. Genes Genom. 36(2): 197-203.
153. Rhyu
D.-W., Kang Y.-J., Ock M.-S., Eo J.-W., Choi Y.-H., Kim W.-J., Leem S.-H., Yi
J.-M., Heui-Soo Kim, and Cha
H.-J. 2014. Expression of human endogenous retrovirus env genes in the blood of
breast cancer patients. Int.
J. Mol. Sci. 15(6): 9173-9183.
154. Yoon
S.-L., Jeong Y., Heui-Soo Kim,
Ahn E.-K., Seol S.-Y., Lee S.-Y., Roh Y.-G., Gim J.-A., Hwang S.Y., and Kang
T.-H. 2014. Conservation of intronic minisatellite polymorphisms in the
SCK1/SHC2 gene of Hominidae. Genes
Genom. 36(3): 375-385.
155. Hwang
S., Jung Y.-D., Cho K., Ock S.-A., Oh K.-B., Heui-Soo Kim, Yun I.-J., Ahn C., Park J.-K., and Im S. 2014.
No expression of porcine endogenous retrovirus after pig to monkey
xenotransplantation. Lab.
Anim. Res. 30(2): 90-93.
156. Jeong
J.-W., Park S., Park C., Chang Y.-C., Moon D.-O., Kim S.O., Kim G.-Y., Cha
H.-J., Heui-Soo Kim, and Choi
Y.-W. 2014. N-benzyl-N-methyldecan-1-amine, a phenylamine derivative isolated
from garlic cloves, induces G2/M phase arrest and apoptosis in U937 human
leukemia cells. Oncol. Rep. 32(1): 373-381.
157. Kim
D.H., Yeo S.H., Park J.-M., Choi J.Y., Lee T.-H., Park S.Y., Ock M.S., Eo J., Heui-Soo Kim, and Cha H.-J.
2014. Genetic markers for diagnosis and pathogenesis of Alzheimer's disease. Gene. 545(2): 185-193.
158. Gim
J.-A., Ayarpadikannan S., Eo J., Kwon Y.-J., Choi Y., Lee H.-K., Park K.-D.,
Yang Y.M., Cho B.-W., and Heui-Soo
Kim 2014. Transcriptional expression changes of glucose metabolism
genes after exercise in thoroughbred horses. Gene. 547(1): 152-158.
159. Mun
S., Lee J., Kim Y.-J., Heui-Soo Kim,
and Han K. 2014. Chimpanzee-specific endogenous retrovirus generates genomic
variations in the chimpanzee genome.
160. Eo
J., Cha H.-J., Imai H., Hirai H., and Heui-Soo
Kim 2014. Short Communication: Expression Profiles of Endogenous
Retroviral Envelopes in Macaca mulatta (Rhesus Monkey). AIDS Res. Hum. Retroviruses. 30(10): 996-1000.
161. Lee
J.-R., Hong C.P., Moon J.-W., Jung Y.-D., Kim D.-S., Kim T.-H., Gim J.-A., Bae
J.-H., Choi Y., Eo J., Kwon Y.-J., Song S., Ko J., Yang Y.M., Lee H.-K., Park
K.-D., Ahn K., Do K.-T., Ha H.-S., Han K., Yi J.M., Cha H.-J., Cho B.-W., Bhak
J., and Heui-Soo Kim 2014.
Genome-wide analysis of DNA methylation patterns in horse. BMC Genomics. 15(1): 598.
162. Do
K.-T., Kong H.-S., Lee J.-H., Lee H.-K., Cho B.-W., Heui-Soo Kim, Ahn K., and Park K.-D. 2014. Genomic
characterization of the Przewalski? s horse
inhabiting Mongolian steppe by whole genome re-sequencing. Livest. Sci. 167: 86-91.
163. Choi
Y., Jung Y.-D., Ayarpadikannan S., Koga A., Imai H., Hirai H., Roos C., Heui-Soo Kim, and Bureau T.
2014. Novel variable number of tandem repeats of gibbon MAOA gene and its
evolutionary significance. Genome. 57(8): 427-432.
164. Lee
S.-H., Kang Y.-J., Jo J.-O., Ock M.S., Baek K.-W., Eo J., Lee W.J., Choi Y.H.,
Kim W.-J., Leem S.-H., Heui-Soo Kim,
and Cha H.-J. 2014. Elevation of human ERV3-1 env protein expression in
colorectal cancer. J.
Clin. Pathol. 67(9): 840-844.
165. Park
K.-D., Kim H., Hwang J.Y., Lee C.-K., Do K.-T., Heui-Soo Kim, Yang Y.-M., Kwon Y.-j., Kim J., and Kim H.J.
2014. Copy Number Deletion Has Little Impact on Gene Expression Levels in
Racehorses. Asian Australas. J. Anim. Sci. 27(9): 1345-1354.
166. Lee
J.-R., Jung Y.-D., Kim Y.-J., Lee H.-E., Jeong H., and Heui-Soo Kim 2014. Identification of L1ASP-derived chimeric
transcripts in lung cancer. Genes
Genom. 36(6): 853-859.
167. Jeong
H., Choi B.-H., Eo J., Kwon Y.-J., Lee H.-E., Choi Y., Gim J.-A., Kim T.-H.,
Seong H.-H., Lee D.-H., Ha J.-H., Han K.-I., and Heui-Soo Kim 2014. Statistical analysis and genetic
diversity of three dog breeds using simple sequence repeats. Genes Genom. 36(6): 883-889.
168. Gim
J.-A., Ha H.-S., Ahn K., Kim D.-S., and Heui-Soo
Kim 2014. Genome-Wide Identification and Classification of MicroRNAs
Derived from Repetitive Elements. Genom.
Inform. 12(4): 261-267.
169. Gim
J.-A., Lee S., Kim D.-S., Jeong K.-S., Hong C.P., Bae J.-H., Moon J.-W., Choi
Y.-S., Cho B.-W., Cho H.-G., Bhak J., and Heui-Soo
Kim 2015. HExDB: a database for epigenetic changes occurring after
horse exercise. Genes Genom. 37(3): 287-294.
170. Lee
H.-E., Choi B.-H., Lee D.-H., Kwon Y.-J., Eo J., Choi Y., Jeong H., Gim J.-A.,
Kim T.-H., Ha J.-H., Han K.-I., and Heui-Soo
Kim 2015. Polymorphism analysis of tyrosine hydroxylase gene variable
number of tandem repeats in various Korean dogs. Genes Genom. 37(3): 257-261.
171. Lee
H.-E., Eo J., and Heui-Soo Kim 2015. Composition and evolutionary importance of transposable elements in
humans and primates. Genes
Genom. 37(2): 135-140.
172. Lee
J., Kim Y.-J., Mun S., Heui-Soo Kim,
and Han K. 2015. Identification of human-specific AluS elements through
comparative genomics. Gene. 555(2): 208-216.
173. Ayarpadikannan
S., Lee H.-E., Han K., and Heui-Soo
Kim 2015. Transposable element-driven transcript diversification and
its relevance to genetic disorders. Gene. 558(2): 187-194.
174. Gim
J.-A., Lee S., Kim D.-S., Jeong K.-S., Hong C.P., Bae J.-H., Moon J.-W., Choi
Y.-S., Cho B.-W., Cho H.-G., Bhak J., and Heui-Soo
Kim 2015. HEpD: A database describing epigenetic differences between
Thoroughbred and Jeju horses. Gene. 560(1): 83-88.
175. Gim
J.-A., Hong C.P., Kim D.-S., Moon J.-W., Choi Y., Eo J., Kwon Y.-J., Lee J.-R.,
Jung Y.-D., Bae J.-H., Choi B.-H., Ko J., Song S., Ahn K., Ha H.-S., Yang Y.M.,
Lee H.-K., Park K.-D., Do K.-T., Han K., Yi J.M., Cha H.-J., Ayarpadikannan S.,
Cho B.-W., Bhak J., and Heui-Soo Kim 2015. Genome-Wide Analysis of DNA Methylation before-and after Exercise in the
Thoroughbred Horse with MeDIP-Seq. Mol.
Cells. 38(3): 210-220.
176. Preetha
N.S., Darvin P., Yoo Y.B., Joung Y.H., Kang D.Y., Kim D.N., Hwang T.S., Kim
S.Y., Kim W.S., Lee H.K., Cho B.W., Heui-Soo
Kim, Park K.D., Park J.H., Chang S.H., and Yang Y.M. 2015. The
combination of methylsulfonylmethane and tamoxifen inhibits the Jak2/STAT5b
pathway and synergistically inhibits tumor growth and metastasis in ER-positive
breast cancer xenografts. BMC
Cancer. 15(1): 474.
177. Gim
J.-A., Han K., and Heui-Soo Kim 2015. Identification and expression analysis of human endogenous retrovirus Y
(HERV-Y) in various human tissues. Arch.
Virol. 160(9): 2161-2168.
178. Song
I.-J., Ikram M., Subhan F., Choi D.-J., Lee J.-R., Heui-Soo Kim, Lim Y.-T., and Yoon S. 2015. Molecular
characterization and expression analysis of mouse epidermal growth factor-like
domain 8. Int. J. Mol. Med. 36(2): 541-550.
179. Han
K., Jin H.J., Heui-Soo Kim,
and Kim N.-S. 2015. Meeting report: The biology of genomes and proteomes. Genes Genom. 37(7): 567-570.
180. Jeong
H., Choi B.-H., Lee H.-E., Gim J.-A., and Heui-Soo
Kim 2015. Microsatellite analysis of genetic variation and structure in
Korean and exotic dog breeds. Genes
Genom.: 37(10): 819-827.
181. Kim
Y.-J., Ahn K., Gim J.-A., Oh M.H., Han K., and Heui-Soo Kim 2015. Gene structure variation in segmental
duplication block C of human chromosome 7q 11.23 during primate evolution. Gene: 573(2): 285-295.
182. Park
S.Y., Jeong M.S., Heui-Soo Kim,
and Jang S.B. 2015. Biochemical and Structural Characterization of Recombinant
Human Endogenous Retrovirus?R. Bulletin of the Korean Chemical
Society. 36(6): 1661-1668.
183. Jeong
H., Lee K., Choi B.-H., Lee H.-E., Gim J.-A., Lee D.-H., Ha J.-H., Han K.-I.,
Cho Y., and Heui-Soo Kim 2015. Statistical modeling for selecting a superior working dog using
microsatellite loci. Genes
Genom.: 37(11): 969-976.
184. Jo JO, Kang YJ, Ock MS, Song KS, Jeong MJ, Jeong SJ, Choi YH, Ko EJ, Leem SH, Kim S, Heui-Soo Kim and Cha HJ. 2016. Expression profiles of HERV-K Env protein in normal and cancerous tissues. Genes
Genom.: 38(1): 91-107.
185. Eo J, Lee HE, Nam GH, Kwon YJ, Choi Y, Choi BH, Huh JW, Kim M, Lee SE, Seo B,
and Heui-Soo Kim. 2016. Association of DNA methylation and monoamine oxidase A gene expression in the brains of different dog breeds. Gene: 580(2):177-182.
186. Kang JS, Kim DJ, Kim GY, Cha HJ, Kim S, Heui-Soo Kim, Park C, Hwang HJ, Kim BW, Kim CM, Choi YH. 2016. Ethanol extract of Prunus mume fruit attenuates hydrogen peroxide-induced oxidative stress and apoptosis involving Nrf2/HO-1 activation in C2C12 myoblasts. Rev Bras Farmacogn. 26:184-190.
187. Nam GH, Gim JA, Lee HE, Kim WJ, Jung H, Kim W, Heui-Soo Kim. 2016. Expression and promoter activity of endogenous retroviruses in the Olive flounder (Paralichthys olivaceus). Genes Genom. (IN PRESS).
188. Lee HE, Selvam A, Heui-Soo Kim. 2016. Role of transposable elements in genomic rearrangement, evolution, gene regulation and epigenetics in primates. Genes Genet. Syst. 90:235:257.
189. Bin Li, Kozo Watanabe, Dong-Hwan Kim, Sang-Bin Lee, Muyoung Heo, Heui-Soo Kim, Tae-Soo Chon. 2016. Identification of Outlier Loci Responding to Anthropogenic and Natural Selection Pressure in Stream Insects Based on a Self-Organizing Map. Water. 8(5):188.
190. Jung H, Yoon BH, Kim WJ, Kim DW, Hurwood DA, Lyons RE, Salin KR, Heui-Soo Kim, Baek I, Chand V, Mather PB. 2016. Optimizing Hybrid de Novo Transcriptome Assembly and Extending Genomic Resources for Giant Freshwater Prawns (Macrobrachium rosenbergii): The Identification of Genes and Markers Associated with Reproduction. Int J Mol Sci. 17(5):690.
191. Kim TO, Park SH, Heui-Soo Kim, Ahuja N, Yi JM. 2016. DNA methylation change in extracellular remodeling pathway genes during the transformation of human mesenchymal stem cells.. Genes Genom. 38:611-617.
192.
Gim JA, Nam GH, Kim WJ, Lee HE, Mishra A, Choe YJ, Park CI, Kim DH, Choi YH, Cha HJ, Yoon DH, Kim S, Heui-Soo Kim. 2016. Detection of LINE RT elements in the olive flounder (Paralichthys olivaceus) genome and expression analysis after infection with S. parauberis.Genes Genom. 38:1105-1110.
193.
Kim DH, Gim JA, Yeo SH,Heui-Soo Kim. 2017. Integrated late onset Alzheimer's disease (LOAD) susceptibility genes: Cholesterol metabolism and trafficking perspectives.Gene. 597:10-16.
194.
Han MH, Lee DS, Jeong JW, Hong SH, Choi IW, Cha HJ, Kim S,Heui-Soo Kim, Park C, Kim GY, Moon SK, Kim WJ, Hyun Choi Y. 2017. Fucoidan Induces ROS-Dependent Apoptosis in 5637 Human Bladder Cancer Cells by Downregulating Telomerase Activity via Inactivation of the PI3K/Akt Signaling Pathway.Drug Dev Res. 78(1):37-48.
195.
Gim JA,Heui-Soo Kim. 2017. Identification and Expression of Equine MER-Derived miRNAs.Mol Cells. 40(4):262-270.
196.
Jeong JW, Cha HJ, Han MH, Hwang SJ, Lee DS, Yoo JS, Choi IW, Kim S,Heui-Soo Kim, Kim GY, Hong SH, Park C, Lee HJ, Choi YH. 2017. Spermidine Protects against Oxidative Stress in Inflammation Models Using Macrophages and Zebrafish. Biomol Ther (Seoul)
197.
Mishra A, Nam GH, Gim JA, Seong M, Choe Y, Lee HE, Jo A, Kim S, Kim DH, Cha HJ, Kang HY, Choi YH, Heui-Soo Kim. 2017. Comparative evaluation of 16S rRNA gene in world-wide strains of Streptococcus iniae and Streptococcus parauberis for early diagnostic marker. Genes Genom. 39: 779-791.
198.
Park HY, Park SH, Jeong JW, Yoon D, Han MH, Lee DS, Choi G, Yim MJ, Lee JM, Kim DH, Kim GY, Choi IW, Kim S, Heui-Soo Kim, Cha HJ, Choi YH. 2017. Induction of p53-Independent Apoptosis and G1 Cell Cycle Arrest by Fucoidan in HCT116 Human Colorectal Carcinoma Cells. Mar Drugs. 15(6). E154.
199.
Kim DH, Gim JA, Mishra A, Lee K, Cho Y,Heui-Soo Kim. 2017. SNP analysis of genes related to cholesterol metabolism and associated with late-onset Alzheimer disease.Genes Genom. 39: 593-600.
200.
Yoon D, Yoon C, Choi H, Noh H, Ok Y, Kim D-H,Heui-Soo Kim, Kim S. 2017. H-NMR-based Metabolomic Study of Miamiensis avidus-infected Olive Flounder. Bull Korean Chem Soc. 38:550-555.
201.
Jo A, Im J, Lee HE, Jang D, Nam GH, Mishra A, Kim WJ, Kim W, Cha HJ, Heui-Soo Kim. 2017.Evolutionary conservation and expression of miR-10a-3p in olive flounder and rock bream. Gene. 628: 16-23.
202.
Kim DH, Gim JA, Yoon D, Kim S, Heui-Soo Kim. 2017. Metabolomics and mitochondrial dysfunction in Alzheimer’s disease. Genes Genom.39:295-300.
203.
Kim DH, Gim JA, Kim KH, Han CW, Jang SB Heui-Soo Kim. 2017. Alzheimer’s disease related genes during primate evolution. Genes Genom. DOI 10.1007/s13258-017-0584.
204.
Mishra A, Nam GH, Gim JA, Lee HE, Jo A, Yoon D, Oh S, Kim S, Kim A, Kim DH, Kim YC, Jeong HD, Cha HJ, Choi YH, Heui-Soo Kim. 2017. Comparative evaluation of MCP gene in worldwide strains of Megalocytivirus (Iridoviridae family) for early diagnostic marker. J Fish Dis. 10:1-12.
205.
Jo A, Lee HE, Heui-Soo Kim. 2017. Genomic Analysis of miR-21-3p and Expression Pattern with Target Gene in Olive Flounder. Genomics & Informatics. 15(3):98-107.
206.
Yun KY, Ko EJ, Kim HY, Lee JY, Eo WK, Ock MS, Kim KH, Cha HJ, Heui-Soo Kim. 2017. Long interspersed element-1 open reading frame 1 protein expression profiles in ovarian cancers. Genes Genome. 39(10):1157-1162.
207.
Kim H, Gim JA, Woo H, Hong J, Kim J, Heui-Soo Kim. 2017. Application of Transposable Elements as Molecular-marker for Cancer Diagnosis. J. Life Sci. 27(10): 1215-1224.
208.
Kim H, Kim A, Kim SM, Nguyen TL, Lim Y, Roh HJ, Kim N, Kim DH, Choi YH, Kim S, Ock MS, Cha HJ, Heui-Soo Kim. 2017. Genome based quantification of Streptococcus parauberis in multiple organs of infected olive flounder. Genes Genome. 39(8):897-902.
209.
Jung YD, Lee HE, Jo A, Hiroo I, Cha HJ, Heui-Soo Kim. 2017. Activity analysis of LTR12C as an effective regulatory element of the RAE1 gene. Gene. 634: 22-28.
210.
Jeong JW, Hwang SJ, Han MH, Lee DS, Yoo JS, Choi IW, Cha HJ, Kim S, Heui-Soo Kim, Kim GY, Jeon YJ, Lee HJ, Park HT, Yoo YH, Choi YH. 2017. Fucoidan inhibits lipopolysaccharide-induced inflammatory responses in RAW 264.7 macrophages and zebrafish larvae Mol Cell Toxicol. 13: 405-417.
211.
Ahn YJ, Markkandan K, Baek IP, Mun S, Lee W, Heui-Soo Kim, Han K. 2018. An efficient and tunable parameter to improve variant calling for whole genome and exome sequencing data. Genes Genom. 40:39-47.
212.
Lee SI, Gim JA, Lim MJ, Heui-Soo Kim, Nam BH, Kim NS. 2018. Ty3/Gypsy retrotransposons in the Pacific abalone Haliotis discus hannai: characterization and use for species identification in the genus Haliotis. Genes Genom. 40:177-187.
213.
Nam GH, Gim JA, Mishra A, Ahn K, Kim S, Kim DH, Cha HJ, Choi YH, Park CI, Heui-Soo Kim. 2018. Identification of transposable elements fused in the exonic region of the olive flounder genome. Genes Genom. https://doi.org/10.1007/s13258-018-0676-2.
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